Fine‐scale habitat partitioning of Chilean and Peale's dolphins and their overlap with aquaculture

1. Predictive species distribution models (SDMs) have become powerful tools to determine habitat use patterns of mobile marine predators and their spatial overlap with potentially impacting anthropogenic activities.
2. This study used SDMs to investigate fine‐scale habitat use patterns of two poorly known and broadly sympatric coastal delphinids, Chilean dolphins (Cephalorhynchus eutropia) and Peale's dolphins (Lagenorhynchus australis), and their spatial interactions with intense aquaculture farming activities in the Chiloé archipelago, southern Chile.
3. A long‐term dataset (2002–2012) of boat‐based dolphin sightings and concurrently in situ collected environmental and anthropogenic variables was analysed using binomial Generalized Additive Models to investigate ecological drivers of each species' fine‐scale distribution and to predict dolphin occurrence spatially.
4. Chilean dolphins preferred shallow (<30 m deep), turbid waters, close to shore (<500 m) and river mouths which often placed them in sheltered bays and channels used intensively by shellfish farms. Peale's dolphins were also found in shallow waters but occurred over a wider range of conditions along more open or exposed coastlines. Both species had to navigate extensive salmon and shellfish farming sites to transit between areas of important habitat.
5. Sightings and predicted occurrence maps showed a clear pattern of spatial habitat partitioning between species, which remained stable across the 11 year study period. The identification of important habitat for Chilean dolphins warrants the consideration of spatially explicit conservation measures to limit the potential effects of overlapping salmon and shellfish farming.
6. The observed differences in ecological plasticity of the two sympatric species should be considered when evaluating and mitigating the effects of environmental change and ongoing anthropogenic pressures on their nearshore habitat. The estimated species–environment relationships could also be used to predict where dolphin habitat and anthropogenic activities are most likely to overlap in other parts of the species' ranges.

     

Balancing resource protection and fishing activity: The case of the European hake in the northern Iberian Peninsula

One of the fundamental aims of the Ecosystem Approach to Fisheries Management is to ensure the long‐term sustainability of the fishery by protecting key life‐cycle habitats, such as recruitment areas. In this study, we apply a hurdle Bayesian hierarchical spatio‐temporal model that describes the abundance of European hake (Merluccius merluccius) recruits in the northern continental shelf of the Iberian Peninsula. Our findings clearly show four persistent nurseries, the main one being located along the continental shelf of the Artabrian gulf (off La Coruña). The preferential habitats identified for the hake recruits are areas within a bathymetric range of 120–200 m, with 15–16°C of Sea Surface Temperature, a Chl‐a concentration of 0.8–1.2 mg/m³ and low values of seabed rugosity (unconsolidated substrates). Searching for a compromise with fisheries, we also assess the degree of overlap of the main nursery areas with two fisheries footprints, a local one using Vessel Monitoring System data of trawl fishery of Marín, and a global one using Automatic Identification System data of different type of trawlers (bottom otter, beam and midwater trawls). The two fisheries footprints present different degree of overlapping in distinct areas, highlight the need of specific fleet‐adapted management rules in order to protect juvenile stages. We discuss that understanding the distributional patterns associated with key life stages, such as recruitment, and their interaction with fishing activities, is essential for applying appropriate spatial management measures and improving fishery sustainability.     

Movement and thermal niche of the first satellite‐tagged Mediterranean spearfish (Tetrapturus belone)

The Mediterranean spearfish (Tetrapturus belone) is one of the least‐studied istiophorid billfishes, with little known of its biology, ecology, and behavior. To assess the species’ movement and thermal niche, we analyzed telemetry data from, to our knowledge, the first and only Mediterranean spearfish ever outfitted with a pop‐up satellite archival transmitting tag. Throughout a 29‐day deployment during July and August 2015, the fish travelled in Italian waters of the Tyrrhenian and Ligurian Seas, spending on average 93% of each 24‐hr period above 30 m and exhibiting a diel activity pattern comprised of daytime vertical movement and nighttime near‐surface residency. The preferred thermal niche was 26–28°C, but the spearfish experienced temperatures as low as 14.2°C during descents. Vertical distribution was limited throughout the deployment with more time spent at depth in areas where the thermocline was comparatively deeper and weaker, consistent with habitat compression experienced by other billfishes.     

Impact of Caligus treatments on unit costs of heterogeneous salmon farms in Chile

We measure the impact that sanitary treatments that control ectoparasite Caligus rogercresseyi abundance have on unit production costs of Salmo salar farms in Chile. We follow complete production cycles for a sample of farms between 2009 and 2015. We estimate a simultaneous salmon biomass growth and Caligus abundance model. The statistical analysis determines the effect of antiparasitic treatments, location of farms, environmental conditions and Caligus abundance on the salmon growth profile. Using outside cost information, we simulate how unit production costs vary by treatment and farm characteristics. Our results suggest that unit production costs increase on average by $1.4?US/kg with Caligus and treatments. Treatment costs are compensated by higher harvesting levels, and unit production costs are invariant to the situation without treatment. All estimated effects differ depending on farm’s environmental and spatial conditions, suggesting that the design of cost-effective intervention calls for discriminatory regulation under heterogeneous conditions.     

芸薹属及其他异源多倍体植物的基因表达特征研究进展

远缘杂交及异源多倍化导致许多重要作物的起源与进化，而芸薹属栽培异源四倍种是研究作物异源多倍化的模式系统之一。异源多倍体是如何调控及协调来自不同二倍体祖先的不同基因组的遗传行为及基因表达，是过去二十年间的研究热点和重要的生物学问题。利用不断发展的分子生物学技术，一方面揭示出芸薹属及其他多倍体物种基因组表现出动态性质，即在形成初期及长期进化过程中持续发生遗传及表观遗传的变化；另一方面发现异源多倍化过程中伴随着大量的基因表达模式改变，包括非加性表达、超亲表达、表达水平显性、部分同源偏向表达、基因剂量平衡效应等现象。上述基因组结构、表观遗传改变以及基因表达模式的调控，使新产生的多倍体得以成功进化为新物种。     

Spatial patterns of the Citrus leprosis virus and its associated mite vector in systems without intervention

Leprosis is caused by the Citrus leprosis virus cytoplasmic type and is vectored by the mite Brevipalpus yothersi. Miticide applications, which cost $54 million annually, are based on inspection for the presence of mites. The aim of the present study was to characterize the spatial patterns of B. yothersi-infested trees and trees with leprosis symptoms for further improvement in sampling and disease control. The presence of mites and the occurrence of leprosis were assessed over two years in 1160 Valencia trees and 720 Natal trees in a commercial sweet orange grove in Sao Paulo State, Brazil. To assess the natural growth and dispersal of mites and leprosis, mite populations were not controlled during the experimental period. Maps of mite-infested trees and trees with leprosis symptoms were analysed at three different levels of spatial hierarchy using complementary methods, i.e. among adjacent trees within and across rows, within quadrats, and the strength and orientation of aggregation among quadrats. The study showed that the spatial patterns of virus-infected and mite-infested trees were different, with a strong aggregation pattern of trees with leprosis symptoms that increased over time. Conversely, the spatial pattern of B. yothersi showed randomness or weak aggregation at all three spatial hierarchical levels. Disease incidence increased steadily in plots of both cultivars, unlike in mite-infested trees where incidence fluctuated over time. These results have important implications for the development of better management strategies for leprosis. Sampling methods and action thresholds for mite control should consider primary disease inoculum in addition to the incidence of mites.     

Measuring patterns and mechanism of greenway use – A case from Guangzhou,China

In the context of recent studies that have begun to establish a more quantifiable understanding of the use of urban greenways, this paper presents a preliminary investigation into the patterns in which a greenway is used and the mechanism behind the pattern of use of the greenway. Factors of the location, economic situation, environment and social background have been measured and analyzed in the use intensity model to interpret their impact on the use intensity of different sections of a greenway. The results suggest that use of the Waterfront Greenway in Guangzhou is highly impacted by population density, employment density, nearby service provision and the connectivity of the greenway to other parts of the city. In this case, the use intensity model with indicators such as location, economic, environmental and social factors has been shown to be applicable to the evaluation of the use of the greenways. Results from the case study suggest that providing greenways close to the residential zones, employment centers and key public services such as hospitals and schools will increase greenway use. The surrounding network system of a greenway must be carefully considered and designed to improve the linking of the greenway to other parts of the city, to increase the number of potential visitors to the greenway.     

Changes in the relationship between species richness and belowground biomass among grassland types and along environmental gradients in Xinjiang,Northwest China

The association between biodiversity and belowground biomass (BGB) remains a central debate in ecology. In this study, we compared the variations in species richness (SR) and BGB as well as their interaction in the top (0-20 cm), middle (20-50 cm) and deep (50-100 cm) soil depths among 8 grassland types (lowland meadow, temperate desert, temperate desert steppe, temperate steppe desert, temperate steppe, temperate meadow steppe, mountain meadow and alpine steppe) and along environmental gradients (elevation, energy condition (annual mean temperature (AMT) and potential evapotranspiration (PET)), and mean annual precipitation (MAP)) based on a 2011-2013 survey of 379 sites in Xinjiang, Northwest China. The SR and BGB varied among the grassland types. The alpine steppe had a medium level of SR but the highest BGB in the top soil depth, whereas the lowland meadow had the lowest SR but the highest BGB in the middle and deep soil depths. The SR and BGB in the different soil depths were tightly associated with elevation, MAP and energy condition; however, the particular forms of trends in SR and BGB depended on environmental factors and soil depths. The relationship between SR and BGB was unimodal in the top soil depth, but SR was positively related with BGB in the middle soil depth. Although elevation, MAP, energy condition and SR had significant effects on BGB, the variations in BGB in the top soil depth were mostly determined by elevation, and those in the middle and deep soil depths were mainly affected by energy condition. These findings highlight the importance of environmental factors in the regulations of SR and BGB as well as their interaction in the grasslands in Xinjiang.     

近55年来河西地区干旱时空演变特征及其与ENSO事件的关系

根据河西地区14个气象站点1961-2015年的逐月气象观测资料，基于SPEI指数采用Mann-Kendall趋势检验法、反距离加权插值(IDW)等方法分析了近55年来河西地区年代际、四季干旱及空间变化特征，并探讨了ENSO 事件与该区干旱的关系。结果表明：在年代际变化上，自20世纪90年代以来河西地区干旱次数增多、干旱程度加重。季节时间变化上，河西地区春、夏、秋季均呈干旱化趋势，春季干旱化趋势最为突出，夏季次之，冬季略呈变湿趋势。空间变化上，整个河西地区春季均呈干旱化趋势，而且大部分地区的春旱趋势极为显著，其中春旱趋势最显著的地方是金塔；冬季整个研究区趋于湿润化。各季节干旱高频区分别集中在：春季在金塔、民勤地区，夏季在河西西北部，秋季在河西中东部及西部的安西—玉门一线，冬季在101°E以西的河西地区。河西地区秋季SPEI与SSTA指数的相关性最为显著，春季次之，夏季最弱。ENSO事件发生强度与河西地区SPEI影响因子的多项式拟合关系表明，ENSO事件强度对温度的影响高于降水；其中在ENSO暖事件(厄尔尼诺事件)发生年份，气温有明显的上升趋势；在ENSO冷事件(拉尼娜事件)发生年份，少数年份降水有所增加，对气温的影响较弱。